Cuban Sci. 2023, 4(2): 1–2
Published on 23 Mar 2024 PDF (213K)evolp: A repository for mutations and gene expression data
Dario A. Leona, Joan Nieves, Roberto Herrero, Frank Quintela, Augusto Gonzalez
- Institute of Cybernetics, Mathematics and Physics, 10400, Havana, Cuba
- Faculty of Physics, University of Havana, 10400, Havana, Cuba
- Instituto Nacional de Investigaciones en Metrologı́a, 10200, Havana, Cuba
- University of Modena & Reggio Emilia, 41125, Modena, Italy
- University of Electronic Science and Technology, 610051, Chengdu, People Republic of China
“We present evolp, a repository with a set of tools for analyzing mutations and gene expression data. We discuss some examples of applications, already published elsewhere.”
References
- D. A. Leon, A. Gonzalez. Mutations as Levy flights. Sci. Rep. 11:9889, 2021
- D. A. Leon, A. Gonzalez. Modeling evolution in a Long Time Evolution Experiment with E. Coli. https://arxiv.org/abs/1804.02660, 2020
- Augusto Gonzalez, Joan Nieves, Dario A. Leon, Maria Luisa Bringas, Pedro Valdes-Sosa. Gene expression rearrangements denoting changes in the biological state. Sci. Rep. 11:8470, 2021
- Roberto Herrero, Dario A. Leon, Augusto Gonzalez. A one-dimensional parameter-free model for carcinogenesis in gene expression space. Sci. Rep. 12:4748, 2022
- Augusto Gonzalez, Frank Quintela, Dario A. Leon, Maria Luisa Bringas-Vega, Pedro A. Valdes-Sosa. Estimating the number of available states for normal and tumor tissues in gene expression space. Biophysical Reports 2(2):100053, 2022
- Augusto Gonzalez, Dario A. Leon, Yasser Perera, Rolando Perez. On the gene expression landscape of cancer. https://arxiv.org/abs/2003.07828v3, 2020
- Yasser Perera, Augusto Gonzalez, Rolando Perez. Principal component analysis of RNA-seq data unveils a novel prostate cancer-associated gene expression signature. Arch. Can. Res. 9(S4):002, 2021
